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| jvs:fscan:manual:chapter2 [2011/08/04 14:27] – voyvodic | jvs:fscan:manual:chapter2 [2014/07/19 15:32] – voyvodic |
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| |[[jvs:fscan:manual:chapter2:quit|quit]]|[[jvs:fscan:manual:chapter2:raw|raw]]|[[jvs:fscan:manual:chapter2:reference|reference]]|[[jvs:fscan:manual:chapter2:regress|regress]]|[[jvs:fscan:manual:chapter2:rename|rename]]|[[jvs:fscan:manual:chapter2:reorder|reorder]]| | |[[jvs:fscan:manual:chapter2:quit|quit]]|[[jvs:fscan:manual:chapter2:raw|raw]]|[[jvs:fscan:manual:chapter2:reference|reference]]|[[jvs:fscan:manual:chapter2:regress|regress]]|[[jvs:fscan:manual:chapter2:rename|rename]]|[[jvs:fscan:manual:chapter2:reorder|reorder]]| |
| |[[jvs:fscan:manual:chapter2:resample|resample]]|[[jvs:fscan:manual:chapter2:reslice|reslice]]|[[jvs:fscan:manual:chapter2:roi|roi]]|[[jvs:fscan:manual:chapter2:run|run]]|[[jvs:fscan:manual:chapter2:series|series]]|[[jvs:fscan:manual:chapter2:set|set]]| | |[[jvs:fscan:manual:chapter2:resample|resample]]|[[jvs:fscan:manual:chapter2:reslice|reslice]]|[[jvs:fscan:manual:chapter2:roi|roi]]|[[jvs:fscan:manual:chapter2:run|run]]|[[jvs:fscan:manual:chapter2:series|series]]|[[jvs:fscan:manual:chapter2:set|set]]| |
| |[[jvs:fscan:manual:chapter2:show|show]]|[[jvs:fscan:manual:chapter2:simulate|simulate]]|[[jvs:fscan:manual:chapter2:stability|stability]]|[[jvs:fscan:manual:chapter2:stats|stats]]|[[jvs:fscan:manual:chapter2:stdev|stdev]]|[[jvs:fscan:manual:chapter2:subset|subset]]| | |[[jvs:fscan:manual:chapter2:show|show]]|[[jvs:fscan:manual:chapter2:simulate|simulate]]|[[jvs:fscan:manual:chapter2:stability|stability]]|[[jvs:fscan:manual:chapter2:stats|stats]]|[[jvs:fscan:manual:chapter2:stdev|stdev]]|[[jvs:fscan:manual:chapter2:resize|resize]]| |
| |[[jvs:fscan:manual:chapter2:surface|surface]]|[[jvs:fscan:manual:chapter2:table|table]]|[[jvs:fscan:manual:chapter2:tpictsignal|tpictsignal]]|[[jvs:fscan:manual:chapter2:transform|transform]]|[[jvs:fscan:manual:chapter2:ttest|ttest]]|[[jvs:fscan:manual:chapter2:verbose|verbose]]| | |[[jvs:fscan:manual:chapter2:surface|surface]]|[[jvs:fscan:manual:chapter2:table|table]]|[[jvs:fscan:manual:chapter2:tpictsignal|tpictsignal]]|[[jvs:fscan:manual:chapter2:transform|transform]]|[[jvs:fscan:manual:chapter2:ttest|ttest]]|[[jvs:fscan:manual:chapter2:verbose|verbose]]| |
| |[[jvs:fscan:manual:chapter2:wait|wait]]|[[jvs:fscan:manual:chapter2:warp|warp]]|[[jvs:fscan:manual:chapter2:watch|watch]]|[[jvs:fscan:manual:chapter2:writeover|writeover]]| | | | |[[jvs:fscan:manual:chapter2:wait|wait]]|[[jvs:fscan:manual:chapter2:warp|warp]]|[[jvs:fscan:manual:chapter2:watch|watch]]|[[jvs:fscan:manual:chapter2:writeover|writeover]]| | | |
| |[[jvs:fscan:manual:chapter2:movie|movie]]| |Generate a time series data set from other data| | |[[jvs:fscan:manual:chapter2:movie|movie]]| |Generate a time series data set from other data| |
| |[[jvs:fscan:manual:chapter2:normalize|normalize]]|-N|Normalize intensities to a constant mean| | |[[jvs:fscan:manual:chapter2:normalize|normalize]]|-N|Normalize intensities to a constant mean| |
| | |[[jvs:fscan:manual:chapter2:omit|omit]]| |Omit some task cycles when analyzing data| |
| |[[jvs:fscan:manual:chapter2:options|options]]|-O|Read and execute a file containing fScan commands| | |[[jvs:fscan:manual:chapter2:options|options]]|-O|Read and execute a file containing fScan commands| |
| |[[jvs:fscan:manual:chapter2:output|output]]|-o|Write a data set to a disk file| | |[[jvs:fscan:manual:chapter2:output|output]]|-o|Write a data set to a disk file| |
| |[[jvs:fscan:manual:chapter2:resample|resample]]| | | | |[[jvs:fscan:manual:chapter2:resample|resample]]| | | |
| |[[jvs:fscan:manual:chapter2:reslice|reslice]]|-z|Resample a 3-D volume data set| | |[[jvs:fscan:manual:chapter2:reslice|reslice]]|-z|Resample a 3-D volume data set| |
| | |[[jvs:fscan:manual:chapter2:resize|resize]]|-s| | |
| |[[jvs:fscan:manual:chapter2:rmap|rmap]]| |Map temporal fluctuations by condition| | |[[jvs:fscan:manual:chapter2:rmap|rmap]]| |Map temporal fluctuations by condition| |
| |[[jvs:fscan:manual:chapter2:roi|roi]]|-b|print STDOUT ROI stats| | |[[jvs:fscan:manual:chapter2:roi|roi]]|-b|print STDOUT ROI stats| |
| |[[jvs:fscan:manual:chapter2:simulate|simulate]]|-y| | | |[[jvs:fscan:manual:chapter2:simulate|simulate]]|-y| | |
| |[[jvs:fscan:manual:chapter2:stability|stability]]|-d|Generate plots of changes in image position and intensity| | |[[jvs:fscan:manual:chapter2:stability|stability]]|-d|Generate plots of changes in image position and intensity| |
| | |[[jvs:fscan:manual:chapter2:start|start]]| |Specify fScan one-time start-up options| |
| |[[jvs:fscan:manual:chapter2:stats|stats]]| |Calculate simple mean, stdev, and count statistics| | |[[jvs:fscan:manual:chapter2:stats|stats]]| |Calculate simple mean, stdev, and count statistics| |
| |[[jvs:fscan:manual:chapter2:stdev|stdev]]|-V|Generate variance images| | |[[jvs:fscan:manual:chapter2:stdev|stdev]]|-V|Generate variance images| |
| |[[jvs:fscan:manual:chapter2:subset|subset]]|-s| | | |
| |[[jvs:fscan:manual:chapter2:surface|surface]]|-S|Surface data| | |[[jvs:fscan:manual:chapter2:surface|surface]]|-S|Surface data| |
| |[[jvs:fscan:manual:chapter2:table|table]]|-t|Manipulate tables -- lists of text and numbers| | |[[jvs:fscan:manual:chapter2:table|table]]|-t|Manipulate tables -- lists of text and numbers| |
