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jvs:fscan:manual:chapter2:align [2013/01/04 17:31] voyvodic |
jvs:fscan:manual:chapter2:align [2023/02/23 18:43] (current) |
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FLAG (octal values in parenthesis -- combine options by adding values): | FLAG (octal values in parenthesis -- combine options by adding values): | ||
- | * 1 (1) - open and display dynamic MutualInformation window | + | * 1 (1) - Fine adjustment |
- | * 2 (2) - Coarse adjustment | + | * 2 (2) - Coarse adjustment |
- | * 4 (4) - NoMove, simply calculate Mutual Information for current registration | + | * 4 (4) - open and display dynamic MutualInformation window |
* 8 (010) - Adjust Offset (translation along axis) | * 8 (010) - Adjust Offset (translation along axis) | ||
* 16 (020) - Adjust Rotation (around axis) | * 16 (020) - Adjust Rotation (around axis) | ||
* 32 (040) - Adjust Scaling (along axis) | * 32 (040) - Adjust Scaling (along axis) | ||
- | * 64 (0100) - X axis | + | * 64 (0100) - Do X axis adjustments |
- | * 128 (0200) - Y axis | + | * 128 (0200) - Do Y axis adjustments |
- | * 256 (0400) - Z axis | + | * 256 (0400) - Do Z axis adjustments |
- | * 1024 (02000) - Use current image overlay as alignment data set (default if DATASET | + | * 512 (01000) - Mask flag -- ignore voxels in current dataset that have low-bit zero |
+ | * 1024 (02000) - Use current image overlay as alignment data set (default if DATASET | ||
+ | * 2048 (04000) - Debug flag -- display mutual information values and single step through alignment | ||
- | Default FLAG is 0733: Adjust X,Y,Z axes for Coarse Offset and Rotation (not Scaling), displaying progress window. | + | Default FLAG is 0737: Adjust X,Y,Z axes for Coarse |
For each parameter being adjusted, ALIGN tests NSTEPS values (default=5), | For each parameter being adjusted, ALIGN tests NSTEPS values (default=5), |