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jvs:fscan:manual:chapter2:align

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jvs:fscan:manual:chapter2:align [2014/08/04 16:03]
127.0.0.1 external edit 		jvs:fscan:manual:chapter2:align [2023/02/23 18:43] (current)
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 FLAG (octal values in parenthesis -- combine options by adding values): FLAG (octal values in parenthesis -- combine options by adding values):
-  * 1 (1) - open and display dynamic MutualInformation window +  * 1 (1) - Fine adjustment 
-  * 2 (2) - Coarse adjustment +  * 2 (2) - Coarse adjustment (if combined with Fine, Coarse runs first) 
-  * 4 (4) - NoMove, simply calculate Mutual Information for current registration+  * 4 (4) - open and display dynamic MutualInformation window
   * 8 (010) - Adjust Offset (translation along axis)   * 8 (010) - Adjust Offset (translation along axis)
   * 16 (020) - Adjust Rotation (around axis)   * 16 (020) - Adjust Rotation (around axis)
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   * 128 (0200) - Do Y axis adjustments   * 128 (0200) - Do Y axis adjustments
   * 256 (0400) - Do Z axis adjustments   * 256 (0400) - Do Z axis adjustments
 +  * 512 (01000) - Mask flag -- ignore voxels in current dataset that have low-bit zero
   * 1024 (02000) - Use current image overlay as alignment data set (default if DATASET omitted)   * 1024 (02000) - Use current image overlay as alignment data set (default if DATASET omitted)
 +  * 2048 (04000) - Debug flag -- display mutual information values and single step through alignment
  
-Default FLAG is 0733: Adjust X,Y,Z axes for Coarse Offset and Rotation (not Scaling), displaying progress window.+Default FLAG is 0737: Adjust X,Y,Z axes for Coarse and Fine Offset and Rotation (not Scaling), displaying progress window.
  
 For each parameter being adjusted, ALIGN tests NSTEPS values (default=5), with NSTEPS/2 values on either side of the starting value. It performs NCYCLES of adjustment (default=3) of all parameters, decreasing the step size on each cycle.  For each parameter being adjusted, ALIGN tests NSTEPS values (default=5), with NSTEPS/2 values on either side of the starting value. It performs NCYCLES of adjustment (default=3) of all parameters, decreasing the step size on each cycle. 
jvs/fscan/manual/chapter2/align.1407168181.txt.gz · Last modified: 2016/01/27 22:41 (external edit)

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