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jvs:fscan:manual:chapter2:clusters
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jvs:fscan:manual:chapter2:clusters [2017/09/12 23:03] voyvodic [Merging Cluster ROIs] |
jvs:fscan:manual:chapter2:clusters [2017/12/08 18:11] voyvodic |
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| FLAG 1 - REFIMAGE is a voxel intensity map (e.g. tval map) | FLAG 1 - REFIMAGE is a voxel intensity map (e.g. tval map) | ||
| FLAG 2 - REFIMAGE is another mask image with attached cluster list. | FLAG 2 - REFIMAGE is another mask image with attached cluster list. | ||
| - | FLAG 3 or 5 - REFIMAGE contains ROI images, typically an Atlas ROI map. | + | FLAG 3 - REFIMAGE contains ROI images, typically an Atlas ROI map. |
| - | + | FLAG 4 - Remove clusters containing less than MINVAL voxels | |
| + | FLAG 5 - Use REFIMAGE to adjust cluster index values. For each cluster, | ||
| + | find REFIMAGE mask value (REFVALUE) at cluster center. New cluster index is: | ||
| + | | ||
| + | where I starts at 1 and increments to ensure each cluster has unique index. | ||
| + | | ||
| Other FLAG values: | Other FLAG values: | ||
| 8 - do not modify input mask image values when editting ROI list; | 8 - do not modify input mask image values when editting ROI list; | ||
jvs/fscan/manual/chapter2/clusters.txt · Last modified: 2023/02/23 18:43 (external edit)
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