Brain Imaging & Analysis Center

-create surface SURFNAME COLOR IMIN IMAX FLAG DOTSIZE
-create plane WIDTH NPIXS FLAG
-create corner
-create sphere
-create paint PAINTNAME SURFNAME FLAG IMIN IMAX THICKNESS SMOOTHFLG
-create paint FLAG IMIN IMAX THICKNESS SMOOTHFLG
-create paint PAINTNAME label SRCFILE LABELFILE CTABFILE
-create paint PAINTNAME annot SRCFILE

The CREATE command is used to create a new data set.

Create SURFACE
This will sample intensity values in the current image volume to create a new 3-D surface data.

• FLAG - The FLAG argument lets you specify sampling options:
  • 1 - binary
  • 2 - fastsurf
  • 4 - ROI
  • 010 - growonly
  • 020 - colors
  • 040 - height - set Z value to intensity
  • 0100 - notriangles
  • 0200 - nosmooth
  • 0400 - noboundary
  • 01000 - addframe
  • 02000 - gtdepth
  • 04000 - eraseall
  • 010000 - noshow
  • 040000 - append
  • 0100000 - outside

Create PAINT
This will sample intensity values in the current image volume to create a 'paint' overlay for existing 3-D surface data. The inputs are the image volume (current data set) and surface (previous data set). Names for paint and surf can be omitted

 -create paint PAINTNAME SURFNAME FLAG IMIN IMAX THICKNESS
 	create PAINTNAME for SURFNAME from intensities in IO_IN volume
	SURF is previous window by default
 -create paint FLAG IMIN IMAX THICKNESS
 	names of paint and surf can be omitted
 -create paint PAINTNAME label SRCFILE LABELFILE CTABFILE
	create PAINTNAME by combining SRCFILE LABELFILE CTABFILE
 -create paint PAINTNAME annot SRCFILE
	??

FLAG:	1	MKPT_MAKEVTX
		2	MKPT_NMLOUT	
		4	MKPT_ZEROS
	  010	MKPT_FILTERED - paint filtered values from window			
	  020	MKPT_NMLFIRST
	  040	MKPT_NOFRAMELIMIT

Note: If the input voxel data set (io) has multiple time points (up to 50), a separate paint “frame” will be created for each time point. If NT > 50 you must specify the NOFRAMELIMIT flag to get multiple frames, otherwise it only generates 1 frame (assuming a movie is not really wanted).

See Also:
fScan Home, fScan Manual, CmdLineOptions, Manual Help