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jvs:fscan:manual:chapter2:physio
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This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
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jvs:fscan:manual:chapter2:physio [2011/10/07 17:27] voyvodic |
jvs:fscan:manual:chapter2:physio [2023/02/23 18:43] (current) |
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| Line 25: | Line 25: | ||
| * 7 - pupilaspect | * 7 - pupilaspect | ||
| * 010 - identify peak values | * 010 - identify peak values | ||
| - | * 020 - | + | * 020 - identify trough values |
| - | * 040 - | + | * 040 - identify zero crossings (050-rising, |
| * 0100 - generate resampled phase values | * 0100 - generate resampled phase values | ||
| * 0200 - generate resampled rate values | * 0200 - generate resampled rate values | ||
| * 0400 - generate resampled amplitude values | * 0400 - generate resampled amplitude values | ||
| - | * 01000 - | + | * 01000 - calculate the amplitude range |
| - | * 02000 - | + | |
| - | * 04000 - | + | |
| * 010000 - flip X/Y axes | * 010000 - flip X/Y axes | ||
| Line 43: | Line 41: | ||
| * tr - scan TR time (sec per volume of images) | * tr - scan TR time (sec per volume of images) | ||
| * nz - number of slices per TR | * nz - number of slices per TR | ||
| - | * interleave - slice timeing | + | * interleave - slice timing |
| * print - control output display options (default printing is to file ' | * print - control output display options (default printing is to file ' | ||
| * 1 - print one-line summary | * 1 - print one-line summary | ||
| Line 49: | Line 47: | ||
| * 4 - print resampled phase, rate, amplitude values | * 4 - print resampled phase, rate, amplitude values | ||
| * 8 - print to standard output rather than default data file | * 8 - print to standard output rather than default data file | ||
| + | * 16 - print RETROICOR parameters | ||
| + | * 32 - print RHVRCOR parameters | ||
| + | * 64 - omit the column header line | ||
| + | * range - with no argument, means just report percent signal fluctuation range | ||
| + | * range - with a number argument, minimum percent signal range needed for physio analysis (default: 2 %) | ||
| **Examples: | **Examples: | ||
jvs/fscan/manual/chapter2/physio.1318008469.txt.gz · Last modified: 2014/08/04 16:03 (external edit)
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