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jvs:fscan:manual:chapter2:reference [2012/06/12 21:07] voyvodic |
jvs:fscan:manual:chapter2:reference [2023/02/23 18:43] (current) |
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== usage: -reference length LENG1 LENG2 ... labels LABEL1 LABEL2 ... delay DELAYTIME skip SKIPTIME (etc.) == | == usage: -reference length LENG1 LENG2 ... labels LABEL1 LABEL2 ... delay DELAYTIME skip SKIPTIME (etc.) == | ||
==== ==== | ==== ==== | ||
- | *REFERENCE has many modifiers, which can be combined in a single -REF command or listed in separate -REF commands within a single command line. The " | + | REFERENCE has many modifiers, which can be combined in a single -ref command or listed in separate -ref commands within a single command line. The " |
+ | **The complete option list is:**\\ | ||
-reference labels | -reference labels | ||
-reference codes CODE1 CODE2 ...\\ | -reference codes CODE1 CODE2 ...\\ | ||
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-reference events\\ | -reference events\\ | ||
-reference starts\\ | -reference starts\\ | ||
- | -reference hrf Latency\\ | + | -reference hrf LATENCY\\ |
- | -reference hrf Latency Transition\\ | + | -reference hrf LATENCY TRANSITION\\ |
- | -reference hrf Latency Rise Width Fall [Undershoot Recovery]\\ | + | -reference hrf LATENCY RISE WIDTH FALL [UNDERSHOOT RECOVERY]\\ |
- | -reference hrf Latency Dip Depth Rise Width Fall Undershoot Recovery\\ | + | -reference hrf LATENCY DIP DEPTH RISE WIDTH FALL UNDERSHOOT RECOVERY\\ |
-reference name REFNAME\\ | -reference name REFNAME\\ | ||
- | -reference expand [ref0] [Npts]\\ | + | -reference expand [REF0] [TOTSECS SECSPERPOINT]\\ |
- | -reference convolve [ref0] ConvRef\\ | + | -reference sine CYCLESECS TOTSECS PHASESECS [SECSPERPOINT]\\ |
- | -reference mask [ref0] MskRef\\ | + | -reference convolve [REF0] CONVREF\\ |
- | -reference schedule [group]\\ | + | -reference mask [REF0] MASKREF\\ |
+ | -reference correlate REF2\\ | ||
+ | -reference response [FLAG]\\ | ||
+ | -reference schedule [GROUP]\\ | ||
-reference new\\ | -reference new\\ | ||
- | -reference | + | -reference |
==== ==== | ==== ==== | ||
*SKIP -The amount of time to ignore at the beginning of the time series | *SKIP -The amount of time to ignore at the beginning of the time series | ||
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====Reading Schedule-format timing files==== | ====Reading Schedule-format timing files==== | ||
SCHEDULE is used to create a reference time course based on linked " | SCHEDULE is used to create a reference time course based on linked " | ||
- | | + | |
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- | -ref schedule b name schedb | + | -ref schedule b name schedb |
- | -ref schedule 1 name sched1 | + | -ref schedule 1 name sched1 |
| | ||
The default group depends on what filenames have been linked. | The default group depends on what filenames have been linked. | ||
If only the first column (sch6...) files were linked: | If only the first column (sch6...) files were linked: | ||
- | -ref schedule | + | -ref schedule |
- | If only the second column (sch_s...) files were linked: | + | If the second column (sch_s...) files were linked the default would include |
- | -ref schedule | + | |
- | If both columns above were linked, | + | you should probably explicitly specify which group you want when creating a new reference time course. |
- | | + | |
====Writing Schedule files==== | ====Writing Schedule files==== | ||
To write out a reference time course as a set of 3-column " | To write out a reference time course as a set of 3-column " | ||
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- | 0.000 | + | 0.000 |
- | 30.000 | + | 10.000 |
- | | + | |
- | 70.000 | + | 50.000 |
- | | + | |
- | 110.000 | + | 90.000 |
- | 120.000 | + | 120.000 |
| | ||
To write MYREF out as schedule files you could use: | To write MYREF out as schedule files you could use: | ||
-ref myref write schedule sch3a | -ref myref write schedule sch3a | ||
- | which would generate files: | + | which would 2 generate files, sch3a_rest.txt and sch3a_taskon.txt: |
- | sch3a_rest.txt | + | |
- | | + | 0.0 10.0 |
+ | | ||
+ | | ||
+ | 120.0 10.0 1 | ||
</ | </ | ||