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jvs:fscan:manual:chapter2:reference

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jvs:fscan:manual:chapter2:reference [2012/06/12 21:24]
voyvodic [Reading Schedule-format timing files] 		jvs:fscan:manual:chapter2:reference [2023/02/23 18:43] (current)
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 -reference hrf LATENCY DIP DEPTH RISE WIDTH FALL UNDERSHOOT RECOVERY\\ -reference hrf LATENCY DIP DEPTH RISE WIDTH FALL UNDERSHOOT RECOVERY\\
 -reference name REFNAME\\ -reference name REFNAME\\
--reference expand [REF0] [NPTS]\\+-reference expand [REF0] [TOTSECS SECSPERPOINT]\\ 
 +-reference sine CYCLESECS TOTSECS PHASESECS [SECSPERPOINT]\\
 -reference convolve [REF0] CONVREF\\ -reference convolve [REF0] CONVREF\\
 -reference mask   [REF0] MASKREF\\ -reference mask   [REF0] MASKREF\\
 +-reference correlate REF2\\
 +-reference response [FLAG]\\
 -reference schedule [GROUP]\\ -reference schedule [GROUP]\\
 -reference new\\ -reference new\\
Line 57: Line 60:
   If only the first column (sch6...) files were linked:   If only the first column (sch6...) files were linked:
      -ref schedule                   (loads only events labeled 'CONDA1' and 'CONDA2')      -ref schedule                   (loads only events labeled 'CONDA1' and 'CONDA2')
-  If only the second column (sch_s...) files were linked: +  If the second column (sch_s...) files were linked the default would include multiple groups ('a', 1, and 2) 
-     -ref schedule                   (loads all FIRSTGRP and SECONDGRP events) +  which is almost certainly not what you want.  If you link multiple schedule file groups to your data sets 
-  If both columns above were linked, the default would include groups 'a', 1, and 2  +  you should probably explicitly specify which group you want when creating a new reference time course. 
-  (almost certainly not what you want).+ 
 ====Writing Schedule files==== ====Writing Schedule files====
 To write out a reference time course as a set of 3-column "schedule" files, use the following command: To write out a reference time course as a set of 3-column "schedule" files, use the following command:
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      Time    Value Duratn Label      Time    Value Duratn Label
-    0.000     1.0   30.0 rest +    0.000     1.0   10.0 rest 
-   30.000     2.0   10.0 taskon +   10.000     2.0   30.0 taskon 
-   40.000     3.0   30.0 rest +   40.000     3.0   10.0 rest 
-   70.000     2.0   10.0 taskon +   50.000     2.0   30.0 taskon 
-   80.000     1.0   30.0 rest +   80.000     1.0   10.0 rest 
-  110.000     2.0   10.0 taskon +   90.000     2.0   30.0 taskon 
-  120.000     3.0   30.0 rest+  120.000     3.0   10.0 rest
      
   To write MYREF out as schedule files you could use:   To write MYREF out as schedule files you could use:
     -ref myref write schedule sch3a     -ref myref write schedule sch3a
-  which would generate files: +  which would 2 generate files, sch3a_rest.txt and sch3a_taskon.txt: 
-    sch3a_rest.txt +     sch3a_rest.txt            sch3a_taskon.txt 
-    sch3a_taskon.txt+    0.0    10.0   1            10.0   30.0   1 
 +   40.0    10.0   1            50.0   30.0   1 
 +   80.0    10.0   1            90.0   30.0   1 
 +  120.0    10.0   1
 </code> </code>
  
jvs/fscan/manual/chapter2/reference.1339536245.txt.gz · Last modified: 2014/08/04 16:03 (external edit)

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