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--- jvs:fscan:manual:chapter2:roistats [2023/10/18 17:58]
voyvodic [-roi stats]
+++ jvs:fscan:manual:chapter2:roistats [2023/10/18 18:11] (current)
voyvodic [-roi stats]
@@ Line 64: / Line 64: @@
   * 4 - atlas areas
   * 8 - threshold (can combine with 1-4)
-  *
-NAME - save stats in file NAME, if specified
-VAL: If VAL > 0, only calculate for this mask value
+NAME - save stats in file NAME, if specified \\
+MASKVAL: If > 0, only calculate for this mask value \\
+PREFIX: string prepended to each data line in report \\
+PRFXHDR: string prepended to column header lines in report \\
+THRESH: explicit threshold level (default is current image threshold, or if FLAG&010000 default is 0.5) \\
+OFFROI: if FLAG&010000, OFFROI is ROI value indicating true-negative voxels \\
+IGNOREROI: if FLAG&010000, ROI value to ignore when making ROC curves\\
+ONROI: if FLAG&010000, ROI value indicating true-positive voxels for ROC curves \\
+NLVLS: Number threshold levels to calculate separately (default=1, or 10 if FLAG&010000)\\
-NLVLS: Number threshold levels to calculate separately (default=1)
+Note: If you want a PREFIX without specifying output file NAME you must include a MASKVAL (0 for default) to avoid syntax confusion.
 If input is a Surface:\\

Brain Imaging & Analysis Center