Brain Imaging & Analysis Center

usage: -stability flag outname refimg slice maxpct

• FLAG - can take on the following values:
  • 0 - read dx/dy values for registration; OUT is treated as IN file/rec
  • 1 - generate dx/dy/dz plots for each time point
  • 2 - generate dx/dy/di plots for each slice separately
  • 4 - censor images where dx or dy is greater than MAXPCT
  • 8 - print volume motion parameters
  • 16 - print image motion parameters
  • 64 - report global X/Y motion values (mean, stdev, max)
  • 128 - use the most frequent position as reference (otherwise use mean value)
  • 512 - create a point ROI at the image center-of-mass for the central timepoint
  • 3 - generate all plots (default)
• REFIMG - reference time point for image registration (default=0)
• SLICE - If specified, only that slice is done, otherwise all.
• MAXPCT - Used when motion censoring (FLAG & 4). Images with displacement greater than MAXPCT of a voxel will be omitted from further analysis (default MAXPCT = 25%).

See Also:
fScan Home, fScan Manual, CmdLineOptions, Manual Help