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mirecc:mireccanat:calc_ff_overlap
#!/bin/bash 
 
SUBJ=$1 
DATADIR=/home/petty/net/selye/data/MIRECC.03/Analysis/ROI/$SUBJ 
 
##create ROIs 
fslmaths ${DATADIR}/amyg_free -mul 4 -add ${DATADIR}/amyg_first $DATADIR/tmp_amyg_union 
fslmaths ${DATADIR}/hipp_free -mul 4 -add ${DATADIR}/hipp_first $DATADIR/tmp_hipp_union 
fslmaths ${DATADIR}/accu_free -mul 4 -add ${DATADIR}/accu_first $DATADIR/tmp_accu_union 
fslmaths ${DATADIR}/caud_free -mul 4 -add ${DATADIR}/caud_first $DATADIR/tmp_caud_union 
 
 
#touch $DATADIR/FF_voxel_counts.txt 
echo "FIRST-FREESURFER OVERLAP VOLUMES" >> $DATADIR/FF_voxel_counts.txt 
for input in tmp_amyg_union tmp_hipp_union tmp_accu_union tmp_caud_union; do 
echo "$DATADIR/$input L" >> $DATADIR/FF_voxel_counts.txt 
fslstats $DATADIR/$input -l 4.9 -u 5.1 -V >> $DATADIR/FF_voxel_counts.txt 
echo "$DATADIR/$input R" >> $DATADIR/FF_voxel_counts.txt 
fslstats $DATADIR/$input -l 9.9 -u 10.1 -V >> $DATADIR/FF_voxel_counts.txt 
done 
 
rm ${DATADIR}/tmp_* 
mirecc/mireccanat/calc_ff_overlap.txt · Last modified: 2014/08/04 16:03 (external edit)