Brain Imaging & Analysis Center

#!/bin/bash
 
SUBJ=$1
DATADIR=/home/petty/net/selye/data/MIRECC.03/Analysis/ROI/$SUBJ
 
##create ROIs
fslmaths ${DATADIR}/hipp_free -mul 4 -add ${DATADIR}/hipp_manual $DATADIR/FreeMan_union
fslmaths ${DATADIR}/hipp_first -mul 4 -add ${DATADIR}/hipp_manual $DATADIR/FirstMan_union
 
#fslmaths ${DATADIR}/hipp_first -mul 10 -add ${DATADIR}/FreeMan_union $DATADIR/all_union
 
 
touch $DATADIR/all_overlap_vols.txt
 
echo "$DATADIR/FreeMan_union L" >> $DATADIR/all_overlap_vols.txt
fslstats $DATADIR/FreeMan_union -l 5.9 -u 6.1 -V >> $DATADIR/all_overlap_vols.txt
echo "$DATADIR/FreeMan_union R" >> $DATADIR/all_overlap_vols.txt
fslstats $DATADIR/FreeMan_union -l 8.9 -u 9.1 -V >> $DATADIR/all_overlap_vols.txt
 
echo "$DATADIR/FirstMan_union L" >> $DATADIR/all_overlap_vols.txt
fslstats $DATADIR/FirstMan_union -l 5.9 -u 6.1 -V >> $DATADIR/all_overlap_vols.txt
echo "$DATADIR/FirstMan_union R" >> $DATADIR/all_overlap_vols.txt
fslstats $DATADIR/FirstMan_union -l 8.9 -u 9.1 -V >> $DATADIR/all_overlap_vols.txt
 
#echo "$DATADIR/all_union L" >> $DATADIR/all_overlap_vols.txt
#fslstats $DATADIR/all_union -l 15.9 -u 16.1 -V >> $DATADIR/all_overlap_vols.txt
#echo "$DATADIR/all_union R" >> $DATADIR/all_overlap_vols.txt
#fslstats $DATADIR/all_union -l 28.9 -u 29.1 -V >> $DATADIR/all_overlap_vols.txt