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jvs:fscan:manual:chapter2:design

fScan Reference Manual, Chapter 2 (CmdLineOptions): design

Designmatrix -- Create and manipulate task design matrix

usage: -designmatrix [NAME designname] [flag]

	-design [flg] [[NAME] dmname] [TR trsecs] [LENGTH ntrs] [DT dtsecs] [NZ nz] varb1 [flg1] varb2 [flg2] ...  
			; load REF varbs (varb1...) into design data variable 
		FLG: 0 - default 
			 1 - convolve with HRF 
			 2 - add derivative varb 
			 4 - different slices can have different values (otherwise there is only one value per TR) 
	-design [flg] [[NAME] dmname] [TR trsecs] [DT dtsecs] filename.mat  
			; read FILENAME.MAT design matrix file into design data 
			; (current active design variable is the default if NAME not specified) 
	-design [flg] [[NAME] dmname] [LABEL varb1name varb2name ...]  
			; adjust design data parameters 
			 
	-design [flg] [[NAME] dmname] filename.con 
			; read FILENAME.CON design contrast file into design data 
			; (current active design variable is the default if NAME not specified) 
 
	-design imagedata [[NAME] dmname]  
			; link design variable NAME to the named image data set 
	-design dmname 
			; make the internal design data variable DMNAME the current active design data 
			; Note: The current active design pointer is set in all DESIGN cmds. 
	-design [name] contrast col1 [-] col2 [label] [col3 [-] col4 [label]] ... 
			; create contrast matrix specifying pairs of columns in the design matrix 
	 
	-design [name] add 
			;  
	-design [name] select 
			;  
	-design name delete 
			;  
	See also:  -output DESIGN [flag] [name] filename 
					FLAG: XML vs FSL format 
					 
			   -output REF    [flag] [name] filename 
	 

See Also:
fScan Home,
fScan Manual,
CmdLineOptions,
Manual Help

jvs/fscan/manual/chapter2/design.txt · Last modified: 2014/08/04 16:03 (external edit)