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--- jvs:fscan:manual:chapter2:design [2011/11/07 18:24]
voyvodic
+++ jvs:fscan:manual:chapter2:design [2023/02/23 18:43]
@@ Line 1: / Line 1: @@
-**fScan Reference Manual, Chapter 2 (CmdLineOptions): design**
-===== Designmatrix -- Create and manipulate task design matrix=====
-**usage: -designmatrix [NAME designname] [flag]**
-  	-design [flg] [[NAME] dmname] [TR trsecs] [LENGTH ntrs] [DT dtsecs] [NZ nz] varb1 [flg1] varb2 [flg2] ...
-  			; load REF varbs (varb1...) into design data variable
-  		FLG: 0 - default
-- convolve with HRF
-- add derivative varb
-- per image (else per TR)
-  	-design [flg] [[NAME] dmname] [TR trsecs] [DT dtsecs] filename.mat
-  			; read FILENAME.MAT design matrix file into design data
-  			; (current active design variable is the default if NAME not specified)
-  	-design [flg] [[NAME] dmname] [LABEL varb1name varb2name ...]
-  			; adjust design data parameters
-  	-design [flg] [[NAME] dmname] filename.con
-  			; read FILENAME.CON design contrast file into design data
-  			; (current active design variable is the default if NAME not specified)
-  	-design imagedata [[NAME] dmname]
-  			; link design variable NAME to the named image data set
-  	-design name
-  			; make the internal design data variable NAME the current active design data
-  			; Note: The current active design pointer is set in all DESIGN cmds.
-  	-design [name] contrast col1 [-] col2 [label] [col3 [-] col4 [label]] ...
-  			; create contrast matrix specifying pairs of columns in the design matrix
-  	-design [name] add
-  			;
-  	-design [name] select
-  			;
-  	-design name delete
-  			;
-  	See also:  -output DESIGN [flag] [name] filename
-  					FLAG: XML vs FSL format
-  			   -output REF    [flag] [name] filename
-**See Also:**\\
-[[jvs:fscan|fScan Home]],
-[[jvs:fscan:manual|fScan Manual]],
-[[jvs:fscan:manual:chapter2|CmdLineOptions]],
-[[jvs:fscan:manual:help|Manual Help]]

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