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--- jvs:fscan:manual:chapter2:design [2011/07/15 15:39]
voyvodic created
+++ jvs:fscan:manual:chapter2:design [2023/02/23 18:43] (current)
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 **fScan Reference Manual, Chapter 2 (CmdLineOptions): design**
-===== Design -- Create and manipulate task design matrix=====
+===== Designmatrix -- Create and manipulate task design matrix=====
-**usage: -design [NAME designname] [flag]**
+**usage: -designmatrix [NAME designname] [flag]**
-===== =====
+  	-design [flg] [[NAME] dmname] [TR trsecs] [LENGTH ntrs] [DT dtsecs] [NZ nz] varb1 [flg1] varb2 [flg2] ...
+  			; load REF varbs (varb1...) into design data variable
+  		FLG: 0 - default
+- convolve with HRF
+- add derivative varb
+- different slices can have different values (otherwise there is only one value per TR)
+  	-design [flg] [[NAME] dmname] [TR trsecs] [DT dtsecs] filename.mat
+  			; read FILENAME.MAT design matrix file into design data
+  			; (current active design variable is the default if NAME not specified)
+  	-design [flg] [[NAME] dmname] [LABEL varb1name varb2name ...]
+  			; adjust design data parameters
+  	-design [flg] [[NAME] dmname] filename.con
+  			; read FILENAME.CON design contrast file into design data
+  			; (current active design variable is the default if NAME not specified)
+  	-design imagedata [[NAME] dmname]
+  			; link design variable NAME to the named image data set
+  	-design dmname
+  			; make the internal design data variable DMNAME the current active design data
+  			; Note: The current active design pointer is set in all DESIGN cmds.
+  	-design [name] contrast col1 [-] col2 [label] [col3 [-] col4 [label]] ...
+  			; create contrast matrix specifying pairs of columns in the design matrix
+  	-design [name] add
+  			;
+  	-design [name] select
+  			;
+  	-design name delete
+  			;
+  	See also:  -output DESIGN [flag] [name] filename
+  					FLAG: XML vs FSL format
+  			   -output REF    [flag] [name] filename
 **See Also:**\\
 [[jvs:fscan|fScan Home]],

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