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jvs:fscan:manual:chapter2:invivo [2014/03/24 17:00]
voyvodic
jvs:fscan:manual:chapter2:invivo [2014/08/04 16:03] (current)
Line 18: Line 18:
 ==== Mode 2 - create local BXH header files for each series in qualifying studyies ==== ==== Mode 2 - create local BXH header files for each series in qualifying studyies ====
 For each series, created DICOM file table, sort by imgnum, then create BXH file. For each series, created DICOM file table, sort by imgnum, then create BXH file.
 +
 +FLAG:
 +  * 1-7 - downsampling by this many images (default=5)
 +  * 8 - downsample 500+ series lists if NIMGS > 50
 +  * 16 - downsample any DICOM series if NIMGS > 50
 +  * 32 - omit DOC images ​
 +  * 64 - omit multiple NQ image series
 +
 +Downsampling by N means only 1 image is saved per N in list. 
 +
 +If NDAYS, only studies with scan_date less than NDAYS old (default=30).
  
 ==== Mode 3 - copy local data to OUTDIR for qualifying studies ==== ==== Mode 3 - copy local data to OUTDIR for qualifying studies ====
Line 26: Line 37:
   * 2 - deidentify name,patid   * 2 - deidentify name,patid
   * 4 - remove dates   * 4 - remove dates
-  * 8 - don't include NQ axial (series 53) +  * 8 - NDAYS is relative to last update in STUDYTABLE, instead of scan date 
-  * 16 - don't include DTI orig images +  * 16 - don't include NQ axial (series 53) 
-  * 32 - include Result series 500-799 +  * 32 - don't include DTI orig images 
-  * 64 - include float 800 series +  * 64 - include Result series 500-799 
-  * 128 - include integer 900 series +  * 128 - include float 800 series 
-  * 256 - include all NQ series +  * 256 - include integer 900 series 
-  * 512 - testing -- don't create/copy files+  * 512 - include all NQ series 
 +  * 1024 - testing -- don't create/copy files 
 + 
 +If NDAYS, only studies with scan_date (or update date) less than NDAYS old (default=30).
  
 ==== Study table format: 1 row per scan session==== ==== Study table format: 1 row per scan session====
jvs/fscan/manual/chapter2/invivo.1395680425.txt.gz · Last modified: 2014/08/04 16:03 (external edit)