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jvs:fscan:manual:chapter2:invivo [2014/03/24 17:00] voyvodic |
jvs:fscan:manual:chapter2:invivo [2023/02/23 18:43] (current) |
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==== Mode 2 - create local BXH header files for each series in qualifying studyies ==== | ==== Mode 2 - create local BXH header files for each series in qualifying studyies ==== | ||
For each series, created DICOM file table, sort by imgnum, then create BXH file. | For each series, created DICOM file table, sort by imgnum, then create BXH file. | ||
+ | |||
+ | FLAG: | ||
+ | * 1-7 - downsampling by this many images (default=5) | ||
+ | * 8 - downsample 500+ series lists if NIMGS > 50 | ||
+ | * 16 - downsample any DICOM series if NIMGS > 50 | ||
+ | * 32 - omit DOC images | ||
+ | * 64 - omit multiple NQ image series | ||
+ | |||
+ | Downsampling by N means only 1 image is saved per N in list. | ||
+ | |||
+ | If NDAYS, only studies with scan_date less than NDAYS old (default=30). | ||
==== Mode 3 - copy local data to OUTDIR for qualifying studies ==== | ==== Mode 3 - copy local data to OUTDIR for qualifying studies ==== | ||
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* 2 - deidentify name,patid | * 2 - deidentify name,patid | ||
* 4 - remove dates | * 4 - remove dates | ||
- | * 8 - don't include NQ axial (series 53) | + | * 8 - NDAYS is relative to last update in STUDYTABLE, instead of scan date |
- | * 16 - don't include DTI orig images | + | * 16 - don't include NQ axial (series 53) |
- | * 32 - include Result series 500-799 | + | * 32 - don't include DTI orig images |
- | * 64 - include float 800 series | + | * 64 - include Result series 500-799 |
- | * 128 - include integer 900 series | + | * 128 - include float 800 series |
- | * 256 - include all NQ series | + | * 256 - include integer 900 series |
- | * 512 - testing -- don't create/copy files | + | * 512 - include all NQ series |
+ | * 1024 - testing -- don't create/copy files | ||
+ | |||
+ | If NDAYS, only studies with scan_date (or update date) less than NDAYS old (default=30). | ||
==== Study table format: 1 row per scan session==== | ==== Study table format: 1 row per scan session==== |