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jvs:fscan:manual:chapter2:reslice [2011/03/31 14:49] 127.0.0.1 external edit |
jvs:fscan:manual:chapter2:reslice [2022/11/16 22:12] voyvodic [Reslice -- Process each slice independently] |
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**fScan Reference Manual, Chapter 2 (CmdLineOptions): | **fScan Reference Manual, Chapter 2 (CmdLineOptions): | ||
===== Reslice -- Process each slice independently===== | ===== Reslice -- Process each slice independently===== | ||
- | ====usage:===== | + | **usage:**\\ |
- | -reslice reslice_file newname sliceflag\\ | + | -reslice |
-reslice overlay newname sliceflag\\ | -reslice overlay newname sliceflag\\ | ||
-reslice transform newname sliceflag\\ | -reslice transform newname sliceflag\\ | ||
- | -reslice | + | -reslice |
+ | -reslice voxsize | ||
+ | -reslice vsort sortref newname\\ | ||
+ | -reslice zsort sortref newname\\ | ||
===== ===== | ===== ===== | ||
- | * RESLICE_FILE - The INFILE images will be resliced in the same orientation as the RESLICE_FILE, | + | RESLICE generates a new data set by resampling the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation. |
+ | |||
+ | * reference | ||
+ | * overlay - \\ | ||
+ | * transform - \\ | ||
+ | * vsort - rearrange volume order. SORTREF can be " | ||
+ | * zsort - rearrange slice order. SORTREF can be " | ||
SLICEFLAG: | SLICEFLAG: | ||
- | * 1 - Interpolate pixel values | + | * 1 - Interpolate pixel values |
* 2 - Do not interpolate pixel values (default is usually interpolation) | * 2 - Do not interpolate pixel values (default is usually interpolation) | ||
* 4 - reslice input to all timepoints in RESLICE_FILE; | * 4 - reslice input to all timepoints in RESLICE_FILE; |