User Tools

Site Tools


jvs:fscan:manual:chapter2:reslice

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

jvs:fscan:manual:chapter2:reslice [2022/11/16 22:12]
voyvodic [Reslice -- Process each slice independently]
jvs:fscan:manual:chapter2:reslice [2023/02/23 18:43]
Line 1: Line 1:
-**fScan Reference Manual, Chapter 2 (CmdLineOptions): reslice** 
-===== Reslice -- Process each slice independently===== 
-**usage:**\\ 
--reslice [reference] reslice_file newname sliceflag\\ 
--reslice overlay newname sliceflag\\ 
--reslice transform newname sliceflag\\ 
--reslice nvoxels nx ny nz [nt] newname sliceflag\\ 
--reslice voxsize xres yres zres [tres] newname sliceflag\\ 
--reslice vsort sortref newname\\ 
--reslice zsort sortref newname\\ 
-===== ===== 
-RESLICE generates a new data set by resampling the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation. 
  
-  * reference - (default) the INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME. If omitted, RESLICE_FILE defaults to the previous image window.\\ 
-  * overlay -   \\ 
-  * transform - \\ 
-  * vsort - rearrange volume order. SORTREF can be "reverse" to simply reverse the volumes in time, or a 1D list of volume numbers, in which case the volumes will be written out in that order. \\ 
-  * zsort - rearrange slice order. SORTREF can be "reverse" to simply reverse the slice order, or a 1D list of slice numbers, in which case the slices will be written out in that order. \\ 
- 
-SLICEFLAG: 
-    * 1 - Interpolate pixel values (default) 
-    * 2 - Do not interpolate pixel values (default is usually interpolation) 
-    * 4 - reslice input to all timepoints in RESLICE_FILE; default is just 1 slice volume 
- 
- 
-**See Also:**\\ 
-[[jvs:fscan|fScan Home]],  
-[[jvs:fscan:manual|fScan Manual]],  
-[[jvs:fscan:manual:chapter2|CmdLineOptions]],  
-[[jvs:fscan:manual:help|Manual Help]] 
jvs/fscan/manual/chapter2/reslice.txt · Last modified: 2023/02/23 18:43 (external edit)