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--- jvs:fscan:manual:chapter2:reslice [2014/08/04 16:03]
127.0.0.1 external edit
+++ jvs:fscan:manual:chapter2:reslice [2023/02/23 18:43] (current)
@@ Line 2: / Line 2: @@
 ===== Reslice -- Process each slice independently=====
 **usage:**\\
--reslice reslice_file newname sliceflag\\
+-reslice [reference] reslice_file newname sliceflag\\
 -reslice overlay newname sliceflag\\
 -reslice transform newname sliceflag\\
--reslice reslice nx ny nz orient xres yres zres tilt
+-reslice nvoxels nx ny nz [nt] newname sliceflag\\
+-reslice voxsize xres yres zres [tres] newname sliceflag\\
+-reslice vsort sortref newname\\
+-reslice zsort sortref newname\\
 ===== =====
-RESLICE generates a new data set by reslicing the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
+RESLICE generates a new data set by resampling the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
-  * RESLICE_FILE - The INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME.
+  * reference - (default) the INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME. If omitted, RESLICE_FILE defaults to the previous image window.\\
+  * overlay -   \\
+  * transform - \\
+  * vsort - rearrange volume order. SORTREF can be "reverse" to simply reverse the volumes in time, or a 1D list of volume numbers, in which case the volumes will be written out in that order. \\
+  * zsort - rearrange slice order. SORTREF can be "reverse" to simply reverse the slice order, or a 1D list of slice numbers, in which case the slices will be written out in that order. \\
 SLICEFLAG:
-    * 1 - Interpolate pixel values
+    * 1 - Interpolate pixel values (default)
     * 2 - Do not interpolate pixel values (default is usually interpolation)
     * 4 - reslice input to all timepoints in RESLICE_FILE; default is just 1 slice volume

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