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jvs:fscan:manual:chapter2:set

fScan Reference Manual, Chapter 2 (CmdLineOptions): set

Set -- Set parameter values

usage: -set SETNAME ARG(s)

The SET command can be used to set control parameters, load special data values, or to create user-defined parameter variables. The first word (SETNAME) following the “-set” command specifies what the command will do.

The CONFIG command is the same as the SET command, except that CONFIG values will be set prior to executing any other processing commands (SET commands are processed with other commands and may therefore not have the intended effect).

Options are:

NameDescription
acceptSet a user variable interactively
activeSet
alertSet
allscaleSet
autoviewSet
colorNNSet color variable (N=1-3)
colormapSet
convolveSet the temporal response convolution kernel
copymaskbitsSet
datafileSet
datapathSet
datasetnameSet the logical name for the current data set
datatypeSet
designSet
dicomtemplateSet
discardSet
displayscaleSet
filenameSet
flirtmtxSet
fontSet
fscanlogSet
glossarySet
hrdelaySet the hemodynamic delay variable
iconSet an icon image file name
imageformatSet the default snapshot file format
imagenameSet the snapshot file name prefix
insetControl inset image options
linkedfileLink a related file to this data set
listSet
locNSet location variable (N=1-3) to an XYZ position
lutscaleSet
mainflagSet
mainwidthSet Main menu text width
mapSet a color map
maptypeSet
marginsSet
matrixSet
menuflagSet
nameSet
numberSet a user-defined number variable
outformatSet the default output file format
overwriteSet the Overwrite flag
paramSet
pdigmfileSet the associated paradigm data file name
quitconfirmSet
quitstrSet
registerSet
rtdxyzvalSet
rtdxyzwinSet
scheduleSet an associated task-timeing schedule file
showpanesSet
showtextSet
showzoomSet
stringSet a user-defined string variable
subtypeSet
surfsubjectSet the (FreeSurfer) subject name
sysvarbSet
taskbarSet
tasknameSet
tempdirSet
textflag1Set
textflag2Set
thumbsizeSet
topblankSet TOPBLANK pixels to 0 at the top of each window
USERNAMESet user-defined variable USERNAME
xmlLoad settings from an XML file
  • colorN COLOR - set color variable (N=1-3) to the indicated color. COLOR can be a color name, a 24 bit color value, or the word 'taskbar' in which case the color will be taken from the most recent pixel clicked in the Taskbar window.
  • convolve NAME - Set the response convolution kernel to the named time series reference (see the reference command for more about time series data). This also activates the convolution flag. When convolution is active, fMRI task reference functions used in are convolved by the kernel before performing correlations.
  • convolve FLAG - Control activation of convolution kernel (0=inactivate, 1:activate). This is ignored if no kernel has been named.
  • hrdelay SECS - set latency offset to use in fMRI time series analyses
  • icon - set icon string
  • imageformat FMT - set format flag for window snapshots ('tiff' or 'jpeg')
  • imagename NAME - set filename prefix for window snapshots
  • inset DATANAME DELAY LOC DT SCALE START - set inset parameters for merging reference images into time series movies created using the ADJUST command. Refer to that command for details about the inset arguments. Inset values remain in effect until turned off (see next line).
  • inset 0 - turn off inset settings
  • linkedfile LINKTYPE FILENAME [BROWSESTRING] - link a related file
  • locN X Y Z - set location variable (N=1-3) to explicit X,Y,Z values
  • map NAME - set color map name (use “-set map name 1” to see map image)
  • matrix - set align matrix file name (unused?)
  • outformat FMT - set default data file output format
  • overwrite FLAG - set file overwrite flag (0=no, 1=yes)
  • pdigmfile [FILENAME [BROWSESTRING]]- set the current dataset's behavioral paradigm file name (e.g. CIGAL pdigm file)
  • surfsubject SUBJNAME - set subject name for surface data files (e.g. FreeSurfer subject name)
  • xml FILENAME - read values from named file

See Also:
Config

fScan Home,
fScan Manual,
CmdLineOptions,
Manual Help

jvs/fscan/manual/chapter2/set.txt · Last modified: 2014/12/28 18:13 by voyvodic