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jvs:fscan:manual:chapter2:set [2011/03/31 14:49]
127.0.0.1 external edit |
jvs:fscan:manual:chapter2:set [2023/02/23 18:43] (current)
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| ====usage: -set SETNAME ARG(s) ==== | ====usage: -set SETNAME ARG(s) ==== |
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| The SET command can be used to set control parameters, load special data values, or to create user-defined parameter variables. The first word (SETNAME) following the "-set" command specifies what the command will do. Options are: | The SET command can be used to set control parameters, load special data values, or to create user-defined parameter variables. The first word (SETNAME) following the "-set" command specifies what the command will do. |
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| |**Name**|**Description**| | The [[jvs:fscan:manual:chapter2:config|CONFIG]] command is the same as the SET command, except that CONFIG values will be set prior to executing any other processing commands (SET commands are processed with other commands and may therefore not have the intended effect). |
| |[[jvs:fscan:manual:chapter2:setname:uservarb|accept]]|Set a user variable interactively | | |
| |[[jvs:fscan:manual:chapter2:setname:color|colorNN]]|Set color variable (N=1-3)| | |
| |[[jvs:fscan:manual:chapter2:setname:convolve|convolve]]|Set the temporal response convolution kernel| | |
| |[[jvs:fscan:manual:chapter2:setname:hrdelay|hrdelay]]|Set the hemodynamic delay variable| | |
| |[[jvs:fscan:manual:chapter2:setname:icon|icon]]|Set an icon image file name| | |
| |[[jvs:fscan:manual:chapter2:setname:imageformat|imageformat]]|Set the default snapshot file format| | |
| |[[jvs:fscan:manual:chapter2:setname:imagename|imagename]]|Set the snapshot file name prefix| | |
| |[[jvs:fscan:manual:chapter2:setname:inset|inset]]|Control inset image options | | |
| |[[jvs:fscan:manual:chapter2:setname:loc|locN]]|Set location variable (N=1-3) to an XYZ position| | |
| |[[jvs:fscan:manual:chapter2:setname:map|map]]|Set a color map| | |
| |[[jvs:fscan:manual:chapter2:setname:uservarb|number]]|Set a user-defined number variable| | |
| |[[jvs:fscan:manual:chapter2:setname:outformat|outformat]]|Set the default output file format| | |
| |[[jvs:fscan:manual:chapter2:setname:overwrite|overwrite]]|Set the Overwrite flag| | |
| |[[jvs:fscan:manual:chapter2:setname:pdigmfile|pdigmfile]]|Set the associated paradigm data file name| | |
| |[[jvs:fscan:manual:chapter2:setname:uservarb|string]]|Set a user-defined string variable| | |
| |[[jvs:fscan:manual:chapter2:setname:surfsubject|surfsubject]]|Set the (FreeSurfer) subject name| | |
| |[[jvs:fscan:manual:chapter2:setname:uservarb|USERNAME]]|Set user-defined variable USERNAME| | |
| |[[jvs:fscan:manual:chapter2:setname:xml|xml]]|Load settings from an XML file| | |
| |
| | Options are: |
| | |
| | |**Name**|**Description**| |
| |[[jvs:fscan:manual:chapter2:setuservarb|accept]]|Set a user variable interactively | | |[[jvs:fscan:manual:chapter2:setuservarb|accept]]|Set a user variable interactively | |
| | |[[jvs:fscan:manual:chapter2:setactive|active]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setalert|alert]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setallscale|allscale]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setautoview|autoview]]|Set | |
| |[[jvs:fscan:manual:chapter2:setcolor|colorNN]]|Set color variable (N=1-3)| | |[[jvs:fscan:manual:chapter2:setcolor|colorNN]]|Set color variable (N=1-3)| |
| | |[[jvs:fscan:manual:chapter2:setcolormap|colormap]]|Set | |
| |[[jvs:fscan:manual:chapter2:setconvolve|convolve]]|Set the temporal response convolution kernel| | |[[jvs:fscan:manual:chapter2:setconvolve|convolve]]|Set the temporal response convolution kernel| |
| | |[[jvs:fscan:manual:chapter2:setcopymaskbits|copymaskbits]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdatafile|datafile]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdatapath|datapath]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdatasetname|datasetname]]|Set the logical name for the current data set| |
| | |[[jvs:fscan:manual:chapter2:setdatatype|datatype]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdesign|design]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdicomtemplate|dicomtemplate]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdiscard|discard]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setdisplayscale|displayscale]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setfilename|filename]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setflirtmtx|flirtmtx]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setfont|font]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setfscanlog|fscanlog]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setglossary|glossary]]|Set | |
| |[[jvs:fscan:manual:chapter2:sethrdelay|hrdelay]]|Set the hemodynamic delay variable| | |[[jvs:fscan:manual:chapter2:sethrdelay|hrdelay]]|Set the hemodynamic delay variable| |
| |[[jvs:fscan:manual:chapter2:seticon|icon]]|Set an icon image file name| | |[[jvs:fscan:manual:chapter2:seticon|icon]]|Set an icon image file name| |
| |[[jvs:fscan:manual:chapter2:setimagename|imagename]]|Set the snapshot file name prefix| | |[[jvs:fscan:manual:chapter2:setimagename|imagename]]|Set the snapshot file name prefix| |
| |[[jvs:fscan:manual:chapter2:setinset|inset]]|Control inset image options | | |[[jvs:fscan:manual:chapter2:setinset|inset]]|Control inset image options | |
| | |[[jvs:fscan:manual:chapter2:setlink|linkedfile]]|Link a related file to this data set | |
| | |[[jvs:fscan:manual:chapter2:setlist|list]]|Set | |
| |[[jvs:fscan:manual:chapter2:setloc|locN]]|Set location variable (N=1-3) to an XYZ position| | |[[jvs:fscan:manual:chapter2:setloc|locN]]|Set location variable (N=1-3) to an XYZ position| |
| | |[[jvs:fscan:manual:chapter2:setlutscale|lutscale]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setmainflag|mainflag]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setmainwidth|mainwidth]]|Set Main menu text width| |
| |[[jvs:fscan:manual:chapter2:setmap|map]]|Set a color map| | |[[jvs:fscan:manual:chapter2:setmap|map]]|Set a color map| |
| | |[[jvs:fscan:manual:chapter2:setmaptype|maptype]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setmargins|margins]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setmatrix|matrix]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setmenuflag|menuflag]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setname|name]]|Set | |
| |[[jvs:fscan:manual:chapter2:setuservarb|number]]|Set a user-defined number variable| | |[[jvs:fscan:manual:chapter2:setuservarb|number]]|Set a user-defined number variable| |
| |[[jvs:fscan:manual:chapter2:setoutformat|outformat]]|Set the default output file format| | |[[jvs:fscan:manual:chapter2:setoutformat|outformat]]|Set the default output file format| |
| |[[jvs:fscan:manual:chapter2:setoverwrite|overwrite]]|Set the Overwrite flag| | |[[jvs:fscan:manual:chapter2:setoverwrite|overwrite]]|Set the Overwrite flag| |
| | |[[jvs:fscan:manual:chapter2:setparam|param]]|Set | |
| |[[jvs:fscan:manual:chapter2:setpdigmfile|pdigmfile]]|Set the associated paradigm data file name| | |[[jvs:fscan:manual:chapter2:setpdigmfile|pdigmfile]]|Set the associated paradigm data file name| |
| | |[[jvs:fscan:manual:chapter2:setquitconfirm|quitconfirm]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setquitstr|quitstr]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setregister|register]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setrtdxyzval|rtdxyzval]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setrtdxyzwin|rtdxyzwin]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setschedule|schedule]]|Set an associated task-timeing schedule file| |
| | |[[jvs:fscan:manual:chapter2:setshowpanes|showpanes]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setshowtext|showtext]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setshowzoom|showzoom]]|Set | |
| |[[jvs:fscan:manual:chapter2:setuservarb|string]]|Set a user-defined string variable| | |[[jvs:fscan:manual:chapter2:setuservarb|string]]|Set a user-defined string variable| |
| | |[[jvs:fscan:manual:chapter2:setsubtype|subtype]]|Set | |
| |[[jvs:fscan:manual:chapter2:setsurfsubject|surfsubject]]|Set the (FreeSurfer) subject name| | |[[jvs:fscan:manual:chapter2:setsurfsubject|surfsubject]]|Set the (FreeSurfer) subject name| |
| | |[[jvs:fscan:manual:chapter2:setsysvarb|sysvarb]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settaskbar|taskbar]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settaskname|taskname]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settempdir|tempdir]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settextflag1|textflag1]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settextflag2|textflag2]]|Set | |
| | |[[jvs:fscan:manual:chapter2:setthumbsize|thumbsize]]|Set | |
| | |[[jvs:fscan:manual:chapter2:settopblank|topblank]]|Set TOPBLANK pixels to 0 at the top of each window| |
| |[[jvs:fscan:manual:chapter2:setuservarb|USERNAME]]|Set user-defined variable USERNAME| | |[[jvs:fscan:manual:chapter2:setuservarb|USERNAME]]|Set user-defined variable USERNAME| |
| |[[jvs:fscan:manual:chapter2:setxml|xml]]|Load settings from an XML file| | |[[jvs:fscan:manual:chapter2:setxml|xml]]|Load settings from an XML file| |
| * inset DATANAME DELAY LOC DT SCALE START - set inset parameters for merging reference images into time series movies created using the [[jvs:fscan:manual:chapter3:imagekeys:adjust|ADJUST]] command. Refer to that command for details about the inset arguments. Inset values remain in effect until turned off (see next line). | * inset DATANAME DELAY LOC DT SCALE START - set inset parameters for merging reference images into time series movies created using the [[jvs:fscan:manual:chapter3:imagekeys:adjust|ADJUST]] command. Refer to that command for details about the inset arguments. Inset values remain in effect until turned off (see next line). |
| * inset 0 - turn off inset settings | * inset 0 - turn off inset settings |
| | * linkedfile LINKTYPE FILENAME [BROWSESTRING] - link a related file |
| * locN X Y Z - set location variable (N=1-3) to explicit X,Y,Z values | * locN X Y Z - set location variable (N=1-3) to explicit X,Y,Z values |
| |
| * outformat FMT - set default data file [[jvs:fscan:manual:chapter2:output|output]] format | * outformat FMT - set default data file [[jvs:fscan:manual:chapter2:output|output]] format |
| * overwrite FLAG - set file overwrite flag (0=no, 1=yes) | * overwrite FLAG - set file overwrite flag (0=no, 1=yes) |
| * pdigmfile FILENAME - set the current dataset's behavioral paradigm file name (e.g. CIGAL pdigm file) | * pdigmfile [FILENAME [BROWSESTRING]]- set the current dataset's behavioral paradigm file name (e.g. CIGAL pdigm file) |
| * surfsubject SUBJNAME - set subject name for surface data files (e.g. FreeSurfer subject name) | * surfsubject SUBJNAME - set subject name for surface data files (e.g. FreeSurfer subject name) |
| * xml FILENAME - read values from named file | * xml FILENAME - read values from named file |
| | |
| **See Also:**\\ | **See Also:**\\ |
| | [[jvs:fscan:manual:chapter2:config|Config]] |
| | |
| [[jvs:fscan|fScan Home]], | [[jvs:fscan|fScan Home]], |
| [[jvs:fscan:manual|fScan Manual]], | [[jvs:fscan:manual|fScan Manual]], |
| [[jvs:fscan:manual:chapter2|CmdLineOptions]], | [[jvs:fscan:manual:chapter2|CmdLineOptions]], |
| [[jvs:fscan:manual:help|Manual Help]] | [[jvs:fscan:manual:help|Manual Help]] |
