This shows you the differences between two versions of the page.
jvs:fscan:manual:chapter2:stability [2011/03/31 14:49] 127.0.0.1 external edit |
jvs:fscan:manual:chapter2:stability [2023/02/23 18:43] |
||
---|---|---|---|
Line 1: | Line 1: | ||
- | **fScan Reference Manual, Chapter 2 (CmdLineOptions): | ||
- | ===== Stability -- Calculate displacements of center-of-mass===== | ||
- | **usage:** -stability flag outname refimg slice maxpct | ||
- | ===== ===== | ||
- | * FLAG - can take on the following values: | ||
- | * 0 - read dx/dy values for registration; | ||
- | * 1 - generate dx/dy/dz plots for each time point | ||
- | * 2 - generate dx/dy/di plots for each slice separately | ||
- | * 4 - censor images where dx or dy is greater than MAXPCT | ||
- | * 8 - use the most frequent position as reference (otherwise use mean value) | ||
- | * 3 - generate all plots (default) | ||
- | * REFIMG - reference time point for image registration (default=0) | ||
- | * SLICE - If specified, only that slice is done, otherwise all. | ||
- | * MAXPCT - Used when motion censoring (FLAG & 4). Images with displacement greater than MAXPCT of a voxel will be omitted from further analysis (default MAXPCT = 25%). | ||
- | **See Also:**\\ | ||
- | [[jvs: | ||
- | [[jvs: | ||
- | [[jvs: | ||
- | [[jvs: |