jvs:fscan:manual:chapter2:set

fScan Reference Manual, Chapter 2 (CmdLineOptions): set

Set -- Set parameter values

usage: -set SETNAME ARG(s)

The SET command can be used to set control parameters, load special data values, or to create user-defined parameter variables. The first word (SETNAME) following the “-set” command specifies what the command will do.

The CONFIG command is the same as the SET command, except that CONFIG values will be set prior to executing any other processing commands (SET commands are processed with other commands and may therefore not have the intended effect).

Options are:

Name	Description
accept	Set a user variable interactively
active	Set
alert	Set
allscale	Set
autoview	Set
colorNN	Set color variable (N=1-3)
colormap	Set
convolve	Set the temporal response convolution kernel
copymaskbits	Set
datafile	Set
datapath	Set
datasetname	Set the logical name for the current data set
datatype	Set
design	Set
dicomtemplate	Set
discard	Set
displayscale	Set
filename	Set
flirtmtx	Set
font	Set
fscanlog	Set
glossary	Set
hrdelay	Set the hemodynamic delay variable
icon	Set an icon image file name
imageformat	Set the default snapshot file format
imagename	Set the snapshot file name prefix
inset	Control inset image options
linkedfile	Link a related file to this data set
list	Set
locN	Set location variable (N=1-3) to an XYZ position
lutscale	Set
mainflag	Set
mainwidth	Set Main menu text width
map	Set a color map
maptype	Set
margins	Set
matrix	Set
menuflag	Set
name	Set
number	Set a user-defined number variable
outformat	Set the default output file format
overwrite	Set the Overwrite flag
param	Set
pdigmfile	Set the associated paradigm data file name
quitconfirm	Set
quitstr	Set
register	Set
rtdxyzval	Set
rtdxyzwin	Set
schedule	Set an associated task-timeing schedule file
showpanes	Set
showtext	Set
showzoom	Set
string	Set a user-defined string variable
subtype	Set
surfsubject	Set the (FreeSurfer) subject name
sysvarb	Set
taskbar	Set
taskname	Set
tempdir	Set
textflag1	Set
textflag2	Set
thumbsize	Set
topblank	Set TOPBLANK pixels to 0 at the top of each window
USERNAME	Set user-defined variable USERNAME
xml	Load settings from an XML file

colorN COLOR - set color variable (N=1-3) to the indicated color. COLOR can be a color name, a 24 bit color value, or the word 'taskbar' in which case the color will be taken from the most recent pixel clicked in the Taskbar window.
convolve NAME - Set the response convolution kernel to the named time series reference (see the reference command for more about time series data). This also activates the convolution flag. When convolution is active, fMRI task reference functions used in are convolved by the kernel before performing correlations.
convolve FLAG - Control activation of convolution kernel (0=inactivate, 1:activate). This is ignored if no kernel has been named.
hrdelay SECS - set latency offset to use in fMRI time series analyses
icon - set icon string
imageformat FMT - set format flag for window snapshots ('tiff' or 'jpeg')

imagename NAME - set filename prefix for window snapshots

inset DATANAME DELAY LOC DT SCALE START - set inset parameters for merging reference images into time series movies created using the ADJUST command. Refer to that command for details about the inset arguments. Inset values remain in effect until turned off (see next line).
inset 0 - turn off inset settings
linkedfile LINKTYPE FILENAME [BROWSESTRING] - link a related file
locN X Y Z - set location variable (N=1-3) to explicit X,Y,Z values

map NAME - set color map name (use “-set map name 1” to see map image)
matrix - set align matrix file name (unused?)

outformat FMT - set default data file output format
overwrite FLAG - set file overwrite flag (0=no, 1=yes)
pdigmfile [FILENAME [BROWSESTRING]]- set the current dataset's behavioral paradigm file name (e.g. CIGAL pdigm file)
surfsubject SUBJNAME - set subject name for surface data files (e.g. FreeSurfer subject name)
xml FILENAME - read values from named file

See Also:
Config

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