biac:analysis
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Table of Contents
BIAC Image Analysis software
- Processing Pipeline - Automated MRI data transfer and preprocessing software.
- BXH/XCEDE tools - Series of tools for describing imaging data (including
bxh_eventstats
) - fScan - fMRI visualization and analysis.
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- Working with MATLAB - A brief overview of how to use MATLAB, including basic syntax, working with variables, and using scripts, functions, and programs.
- showsrs2 - Matlab tool for viewing of fMRI data.
- Tstatprofile - Matlab function for event-related fMRI data (deprecated in favor of bxheventstats).
BIAC support for other imaging software packages
- SPM - Statistical Parametric Mapping software from the University of London
- FreeSurfer - Cortical surface reconstruction software from Harvard University
- FSL - Statistical analysis software from Oxford University
- DTIPrep - DTI QA and preprocessing software from NRRD
- DTK - Diffusion ToolKit for DTI analysis from Harvard
- MEDInria - DTI analysis from France
Other Analysis software
Eyetracking analysis
Resting State Methods
- Python/FSL Resting State Pipeline Documentation of the BIAC resting state pipeline
- Physiological Correction Methods Documentation of some local correction methods
Useful Guides
- provided by the Huettel Lab
- Guide for new members: Some things to get familiar with
- Guides for data analysis: ( FSL Course, Neuro Boot Camp, Eventstats, mricron, python, misc tools, thresholding )
- Guides for stimulus presentation software: ( CIGAL, PsychtoolBox, Optseq2 )
- Guides for running subjects: Information about running subjects
- Matlab info: Useful information and common issues while running matlab
Download
- Downloadable Software - distribution of BIAC tools freely available for individual use.
biac/analysis.1407168181.txt.gz · Last modified: 2024/06/21 15:41 (external edit)